miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|194637217|gb|FK908725.1|FK908725 ACCCTGTCTTTATTATTATTACTTTTGTCACATATCATAAAGGCACTTGTTGTAATTTCAATAATGAAATTGTGTTTTTT
TAAATTAATGAACAGGAATTGAGACTGATATCTCCACTCGTCATTTCTGGCTCAATTTCCAATGGTTTGCTCTCAATAAC
AATATTCCTCATACATCCTACGTAGTCATGCTGCGTTGAAAGACCTCTTAGTCTTCTCTTCTTGGGATGTCCACCTATAT
ATAAACCGTGGTTAGTGTCCGTAAATGATACTCCAGGAACTCCGATGGCTGCTGGAGAAAATATTCCATCGACAGGGACT
GTGACAACGTTTTTCGCTTTTACAGCTTGAATACGATGCCACTTTCCATCACAGAGACTGAAAGTTGTTTTGGGTTTAAA
GCTACTAAAAATAGGCCCTCTTCCATTATCTGCGGTGAATTGTATTGCTCCGTCAATCATCTGGAGAATGAGATAGTCCT
TCCTACCCTGGATAGCTAAGAGTATACCAGAGATATTTCGAGGCTTAATGTCCATGTTAATATCAAAGTCCTTTCCAACA
CGATACCTAGGTTGAACAAGAATATGCCCTCCCTTGGATCCAAAGAAACTTCCTTGCTCAACCATATCAGAGCAAGCAAT
CACGCCATTACTGTTATTCTTACTCCATTTTCCGATTCGTTTTCGCCTGTGAATAAATTCTCTAAGACATCCCACAAATC
CAGTTGTAGCCCTCATTAAGTTTCTTTGTACAGGCAACTCTTCTCTGAGTTCTTGTTTGATACCGCCCAGGAAAAGTTCT
GGAATTAC




Most similar to sp|Q00174|LAMA_DROME

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9FGK3|MO25N_ARATH Putative MO25-like protein At5g47540
           OS=Arabidopsis thaliana GN=At5g47540 PE=2 SV=1
          Length = 343

 Score =  213 bits (541), Expect(2) = 2e-57
 Identities = 112/161 (69%), Positives = 124/161 (77%), Gaps = 11/161 (6%)
 Frame = +2

Query: 443 MKSLFKSKPRTPSDIVXXXXXXXXXXXXXXX-----------KMAELTKNLREMKSILYG 589
           MK LFKSKPRTP+D+V                          KMAEL++N+R+MKSILYG
Sbjct: 1   MKGLFKSKPRTPADLVRQTRDLLLFSDRSTSLPDLRDSKRDEKMAELSRNIRDMKSILYG 60

Query: 590 NSESEPVPEACAQLTQEFFKENTLRLLIQCLPKLNLEARKDATQIVANLQRQQVQSKLIA 769
           NSE+EPV EACAQLTQEFFKE+TLRLLI CLPKLNLE RKDATQ+VANLQRQQV S+LIA
Sbjct: 61  NSEAEPVAEACAQLTQEFFKEDTLRLLITCLPKLNLETRKDATQVVANLQRQQVNSRLIA 120

Query: 770 SDYLETNLDLMDVLITGYENMDMALXYGAMLRECIRXQIVA 892
           SDYLE N+DLMDVLI G+EN DMAL YGAM RECIR QIVA
Sbjct: 121 SDYLEANIDLMDVLIEGFENTDMALHYGAMFRECIRHQIVA 161



 Score = 32.0 bits (71), Expect(2) = 2e-57
 Identities = 13/18 (72%), Positives = 15/18 (83%)
 Frame = +1

Query: 892 KYVLDSPHMKKFFDYXXL 945
           KYVL+S H+KKFFDY  L
Sbjct: 162 KYVLESDHVKKFFDYIQL 179


>sp|Q9M0M4|MO25M_ARATH Putative MO25-like protein At4g17270
           OS=Arabidopsis thaliana GN=At4g17270 PE=2 SV=1
          Length = 343

 Score =  192 bits (488), Expect(2) = 9e-51
 Identities = 101/161 (62%), Positives = 118/161 (73%), Gaps = 11/161 (6%)
 Frame = +2

Query: 443 MKSLFKSKPRTPSDIVXXXXXXXXXXXXXXX-----------KMAELTKNLREMKSILYG 589
           M+ LFKSKPRTP+DIV                          KM EL+K++R++K ILYG
Sbjct: 1   MRGLFKSKPRTPADIVRQTRDLLLYADRSNSFPDLRESKREEKMVELSKSIRDLKLILYG 60

Query: 590 NSESEPVPEACAQLTQEFFKENTLRLLIQCLPKLNLEARKDATQIVANLQRQQVQSKLIA 769
           NSE+EPV EACAQLTQEFFK +TLR L+  LP LNLEARKDATQ+VANLQRQQV S+LIA
Sbjct: 61  NSEAEPVAEACAQLTQEFFKADTLRRLLTSLPNLNLEARKDATQVVANLQRQQVNSRLIA 120

Query: 770 SDYLETNLDLMDVLITGYENMDMALXYGAMLRECIRXQIVA 892
           +DYLE+N+DLMD L+ G+EN DMAL YG M RECIR QIVA
Sbjct: 121 ADYLESNIDLMDFLVDGFENTDMALHYGTMFRECIRHQIVA 161



 Score = 30.0 bits (66), Expect(2) = 9e-51
 Identities = 13/18 (72%), Positives = 14/18 (77%)
 Frame = +1

Query: 892 KYVLDSPHMKKFFDYXXL 945
           KYVLDS H+KKFF Y  L
Sbjct: 162 KYVLDSEHVKKFFYYIQL 179


>sp|Q9ZQ77|MO25L_ARATH MO25-like protein At2g03410 OS=Arabidopsis
           thaliana GN=At2g03410 PE=2 SV=1
          Length = 348

 Score =  160 bits (404), Expect(2) = 2e-40
 Identities = 85/162 (52%), Positives = 114/162 (70%), Gaps = 12/162 (7%)
 Frame = +2

Query: 443 MKSLFKSKPRTPSDIVXXXXXXXXXXXXXXXKM-----------AELTKNLREMKSILYG 589
           MK LFK+K R P +IV               +            AEL +N+R++KSILYG
Sbjct: 1   MKGLFKNKSRLPGEIVRQTRDLIALAESEEEETDARNSKRLGICAELCRNIRDLKSILYG 60

Query: 590 NSESEPVPEACAQLTQEFFKENTLRLLIQCLPKLNLEARKDATQIVANLQRQQVQSKLIA 769
           N E+EPVPEAC  LTQEFF+ +TLR LI+ +PKL+LEARKDATQIVANLQ+QQV+ +L+A
Sbjct: 61  NGEAEPVPEACLLLTQEFFRADTLRPLIKSIPKLDLEARKDATQIVANLQKQQVEFRLVA 120

Query: 770 SDYLETNLDLMDVLITGYE-NMDMALXYGAMLRECIRXQIVA 892
           S+YLE+NLD++D L+ G + + ++AL Y  ML+EC+R Q+VA
Sbjct: 121 SEYLESNLDVIDSLVEGIDHDHELALHYTGMLKECVRHQVVA 162



 Score = 27.7 bits (60), Expect(2) = 2e-40
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +1

Query: 892 KYVLDSPHMKKFFDYXXL 945
           KY+L+S +++KFFDY  L
Sbjct: 163 KYILESKNLEKFFDYVQL 180


BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q00174|LAMA_DROME Laminin subunit alpha OS=Drosophila melanogaster
            GN=LanA PE=1 SV=2
          Length = 3712

 Score =  135 bits (340), Expect = 3e-31
 Identities = 72/238 (30%), Positives = 122/238 (51%), Gaps = 1/238 (0%)
 Frame = -1

Query: 796  LFLGGIKQELREELPVQRNLMRATTGFVGCLREFIHRRKRIGKWSKNNSNGVIACSDMVE 617
            ++LGG+ + L  E+    +       F GCL+    +   +   +     GV+ CS+ VE
Sbjct: 3476 IYLGGVNKFLESEVKNLTDFKTEVPYFNGCLKNI--KFDAMDLETPPEEFGVVPCSEQVE 3533

Query: 616  QGSFFGSKGGHILVQPRYRVGKDFDINMDIKPRNISGILLAIQGRKDYLILQMIDGAIQF 437
            +G FF ++   + +   + VG +  I+ D +PR+ +G+L ++ G+  Y IL+++D  + F
Sbjct: 3534 RGLFFNNQKAFVKIFDHFDVGTEMKISFDFRPRDPNGLLFSVHGKNSYAILELVDNTLYF 3593

Query: 436  TADNGRGPIFSS-FKPKTTFSLCDGKWHRIQAVKAKNVVTVPVDGIFSPAAIGVPGVSFT 260
            T       I S+ +K     S CDGK   +QA+K+K V+ + VD I S   +G  G   T
Sbjct: 3594 TVKTDLKNIVSTNYKLPNNESFCDGKTRNVQAIKSKFVINIAVDFISSNPGVGNEGSVIT 3653

Query: 259  DTNHGLYIGGHPKKRRLRGLSTQHDYVGCMRNIVIESKPLEIEPEMTSGDISLNSCSL 86
             TN  L++GGH   +R  G+ T+  + GC+  + +  + + I P M  GDI    C L
Sbjct: 3654 RTNRPLFLGGHVAFQRAPGIKTKKSFKGCISKVEVNQRMINITPNMVVGDIWQGYCPL 3711